lnu.sePublications
Change search
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf
Relation between structure and function of three AvBD3b variants from mallard (Anas platyrhynchos)
Linnaeus University, Faculty of Health and Life Sciences, Department of Biology and Environmental Science. (Ctr Ecol & Evolut Microbial Model Syst EEMiS;Zoonotic Ecology and Epidemiology)
Linnaeus University, Faculty of Health and Life Sciences, Department of Biology and Environmental Science. University of Kansas, USA. (Ctr Ecol & Evolut Microbial Model Syst EEMiS)ORCID iD: 0000-0003-2849-1094
Linnaeus University, Faculty of Health and Life Sciences, Department of Biology and Environmental Science. (Ctr Ecol & Evolut Microbial Model Syst EEMiS;Zoonotic Ecology and Epidemiology)
Linnaeus University, Faculty of Health and Life Sciences, Department of Biology and Environmental Science. (Ctr Ecol & Evolut Microbial Model Syst EEMiS)
Show others and affiliations
(English)Manuscript (preprint) (Other academic)
Abstract [en]

Defensins are multifunctional antimicrobial peptides expressed in several tissue types and leucocytes as part of the innate immune response against microbes. Based on the three-dimensional structure and disulfide connectivity, vertebrate defensins are subdivided into α-, β-, and θ-defensins. While all three types have been found in mammals, only β-defensins have been identified in birds. Genetic studies have revealed dozens of different avian β-defensin (AvBD) genes in different bird species, as well as allelic variation for different genes. Knowledge of the relation between avian peptide structure features and antimicrobial activity is however limited. In this study, the structure-functional relations of three variants of AvBD3b, a mallard (Anas platyrhynchos) defensin of evolutionary interest, was investigated. Gene alleles encoding two of these peptides, AvBD3b:1 and AvBD3b:2 are common in mallards, whereas AvBD3b:3 occurs rare. These β-defensin peptides were synthesized as linear peptides and subjected to oxidative folding. The three-dimensional structure of AvBD3b:1, including disulfide bond connectivity, was determined using NMR, and those of AvBD3b:2 and AvBD3b:3 respectively, were modelled using AvBD3b:1 as the template. The antimicrobial activities of folded peptides were compared to those of linear peptides. The NMR analysis showed that folded AvBD3b adopts a three-dimensional structure typical for β-defensins, including C-terminal antiparallel β-sheets and disulfide bond organization between six cysteine (C) residues: C6-C34, C13-C28, and C18-C35. Analyses of antimicrobial activity showed that both folded and linear variants of the three peptides inhibited bacterial growth. However, differences in activity were observed, suggesting that folded AvBD3b:3 was the most efficient against both Gram-negative and Gram-positive bacteria. Taken together, these findings provide additional insight into the influence of amino acid sequence variation and three-dimensional structure on the antimicrobial activity of mallard AvBD3b.

National Category
Immunology
Research subject
Biomedical Sciences, Immunology
Identifiers
URN: urn:nbn:se:lnu:diva-91970OAI: oai:DiVA.org:lnu-91970DiVA, id: diva2:1392373
Available from: 2020-02-07 Created: 2020-02-07 Last updated: 2020-02-21Bibliographically approved
In thesis
1. Eco-immunological studies of innate immunity in Mallards (Anas platyrhynchos)
Open this publication in new window or tab >>Eco-immunological studies of innate immunity in Mallards (Anas platyrhynchos)
2020 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

This thesis comprises two sections, both of which explore eco-immunology of the innate immune system of mallards (Anas platyrhynchos). The innate immune system serves a pivotal role as the first line of defense against invading pathogens, and is comprised of physical and chemical barriers. Its main function is to inhibit and/or eliminate the pathogenic microorganisms while minimizing collateral damage to host cells.

The first section investigates the allelic variation and selective forces acting on five avian β-defensins (AvBD) genes. Showing that purifying selection is the predominant selective force, although one gene AvBD3b, appeared to be subject to balancing selection. Moreover, the solution structure of the AvBD3b peptide was solved in this work, revealing that it contains a typical β-defensin fold with three β-sheets. Linear and folded AvBD3b peptides were shown to exhibit similar antibacterial properties, indicating that the tertiary structure was not the primary determinant of antimicrobial activity. Moreover, testing the antimicrobial activity of synthetic AvBD peptides showed that they mostly had higher activity against Gram-negative than Gram-positive bacteria.

The second section investigates expression of two innate immune genes during avian influenza virus infection. Data quality in gene expression studies depends, in part, on the stability of the reference genes (RGs) used to normalize expression levels, meaning putative RGs must be validated prior to use. Eleven potential mallard RGs were tested and it was found that the stability varied across different tissue types, highlighting the importance of correct RG selection for the specific experimental conditions. Optimal RGs were then used in a gene expression study of retinoic acid inducible gene 1 (RIG-I) and myxovirus resistant gene (Mx) in mallards during a low pathogenic avian influenza (LPAI) infection. Upregulation of both genes was rapid and transient, returning back to basal levels two days post infection across most of the five tissue types analyzed.

This thesis provides new insights into the tertiary structure and antimicrobial activity of AvBDs, and how this relates to selective pressures exerted in natural populations. It also highlights the importance of RGs validation, and confirms that RIG-I and Mx are involved in the early stages of the mallard immune response to LPAI infection.

Abstract [sv]

Den här avhandlingen består av två delar, vilka fokuserar på olika delar av det medfödda immunförsvaret hos gräsand (Anas platyrhynchos). Det medfödda immunförsvaret består av fysiska och kemiska barriärer vars uppgift är att hindra patogener att infektera kroppens celler, och att vid infektion eliminera dem.

Första delen undersöker allelvariation och selektion hos generna för fem olika β-defensiner (AvBD) hos gräsand och andra änder. Studierna visade att stabiliserande urval är den dominerande selektionskraften för dessa gener utom för AvBD3b, som var föremål för balanserande selektion. Den tredimensionella strukturen för AvBD3b bestämdes och uppvisade en generell β-defensinstruktur innehållande tre β-flak. Syntetiserade linjära och veckade AvBD3b-peptider hade liknande antibakteriella egenskaper, vilket antyder att den tredimensionella strukturen inte är avgörande för den antibakteriella funktionen. Den antimikrobiella aktiviteten hos ytterligare fem AvBD-peptider testades och uppvisade en högre aktivitet mot Gram-negativa än mot Gram-positiva bakterier.

Andra delen undersöker genuttryck av två immunförsvarsgener vid fågelinfluensainfektion. Vid genuttrycksstudier är resultatet till viss del beroende av stabiliteten hos de referensgener (RG) som används för normalisering av data. Därför behöver dessa validerades innan användning vid genuttrycksstudier. Elva potentiella RG testades och uppvisade varierande uttryck i olika vävnader hos gräsand, vilket visar vikten av att testa stabiliteten för den specifika experimentuppställningen. Baserat på dessa resultat användes referensgenerna i ett experiment där genuttrycket av retinoic acid inducible gene 1 (RIG-I) och myxovirus resistance gene (Mx) undersöktes i gräsänder infekterade med fågelinfluensavirus. Båda generna uppvisade en snabb och övergående uppreglering, där genuttrycket återgick till bakgrundsnivåer två dagar efter infektionsstart i nästan alla analyserade vävnader.

Denna avhandling ger nya insikter om genetisk diversitet och evolution hos AvBD-gener i gräsand. Den tredimensionella strukturen av AvBD3b bidrar till ökad kunskap om AvBD-strukturer då endast några få defensinstrukturer från fåglar tidigare bestämts. Avhandlingen visar även på vikten av att undersöka stabiliteten hos potentiella referensgener för att få pålitliga resultat vid expressionsstudier samt att generna RIG-I och Mx är involverade under den tidiga immunresponsen vid fågelinfluensavirusinfektion i gräsänder.

Place, publisher, year, edition, pages
Växjö: Linnaeus University Press, 2020. p. 64
Series
Linnaeus University Dissertations ; 376/2020
Keywords
Avian β-defensins (AvBDs), Avian gene expression, Host-pathogen interactions, Innate immunity, Mallard (Anas platyrhynchos), Myxovirus resistance gene (Mx), Retinoic acid inducible gene 1 (RIG-I), Avian β-defensins (AvBD), Genuttryck, Gräsand (Anas platyrhynchos), Immunförsvar, Immungener, Myxovirus resistant gene (Mx), Patogen, Retinoic acid inducible gene 1 (RIG-I)
National Category
Ecology
Identifiers
urn:nbn:se:lnu:diva-91986 (URN)978-91-89081-33-8 (ISBN)978-91-89081-34-5 (ISBN)
Public defence
2020-02-28, Fullriggaren (Ma135), Kalmar, 09:30 (English)
Opponent
Supervisors
Available from: 2020-03-03 Created: 2020-02-07 Last updated: 2020-05-13Bibliographically approved

Open Access in DiVA

No full text in DiVA

Authority records BETA

Helin, Anu S.Chapman, Joanne R.Tolf, ConnyAndersson, Håkan S.Waldenström, Jonas

Search in DiVA

By author/editor
Helin, Anu S.Chapman, Joanne R.Tolf, ConnyAarts, LaurenBususu, IsayaAndersson, Håkan S.Waldenström, Jonas
By organisation
Department of Biology and Environmental ScienceDepartment of Chemistry and Biomedical Sciences
Immunology

Search outside of DiVA

GoogleGoogle Scholar

urn-nbn

Altmetric score

urn-nbn
Total: 17 hits
CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf