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On Open Problems in Biological Network Visualization
Växjö University, Faculty of Mathematics/Science/Technology, School of Mathematics and Systems Engineering. (ISOVIS)ORCID iD: 0000-0002-0519-2537
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2009 (English)In: Graph Drawing: 17th International Symposium, GD 2009, Chicago, IL, USA, September 22-25, 2009. Revised Papers / [ed] David Eppstein and Emden R. Gansner, Berlin Heidelberg New York: Springer, 2009, p. 256-267Chapter in book (Refereed)
Abstract [en]

Much of the data generated and analyzed in the life sciences can be interpreted and represented by networks or graphs. Network analysis and visualization methods help in investigating them, and many universal as well as special-purpose tools and libraries are available for this task. However, the two fields of graph drawing and network biology are still largely disconnected. Hence, visualization of biological networks does typically not apply state-of-the-art graph drawing techniques, and graph drawing tools do not respect the drawing conventions of the life science community.

In this paper, we analyze some of the major problems arising in biological network visualization.We characterize these problems and formulate a series of open graph drawing problems. These use cases illustrate the need for efficient algorithms to present, explore, evaluate, and compare biological network data. For each use case, problems are discussed and possible solutions suggested.

Place, publisher, year, edition, pages
Berlin Heidelberg New York: Springer, 2009. p. 256-267
Series
LNCS, ISSN 0302-9743 ; 5849
Keywords [en]
Network Visualization, Graph Drawing, Biochemical Networks, Challenges
National Category
Computer Sciences
Research subject
Computer and Information Sciences Computer Science
Identifiers
URN: urn:nbn:se:vxu:diva-5661DOI: 10.1007/978-3-642-11805-0_25ISBN: 978-3-642-11804-3 (print)OAI: oai:DiVA.org:vxu-5661DiVA, id: diva2:228801
Conference
the 17th International Symposium on Graph Drawing (GD '09)
Available from: 2009-08-06 Created: 2009-08-06 Last updated: 2018-01-13Bibliographically approved

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Kerren, Andreas

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CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • harvard1
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf