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Network Visualization for Integrative Bioinformatics
Linnaeus University, Faculty of Technology, Department of Computer Science. (ISOVIS)ORCID iD: 0000-0002-0519-2537
Martin Luther University .
2014 (English)In: Approaches in Integrative Bioinformatics: Towards the Virtual Cell / [ed] Ming Chen and Ralf Hofestädt, Berlin Heidelberg: Springer, 2014, 173-202 p.Chapter in book (Refereed)
Abstract [en]

Approaches to investigate biological processes have been of strong interest in the past few years and are the focus of several research areas like systems biology. Biological networks as representations of such processes are crucial for an extensive understanding of living beings. Due to their size and complexity, their growth and continuous change, as well as their compilation from databases on demand, researchers very often request novel network visualization, interaction and exploration techniques. In this chapter, we first provide background information that is needed for the interactive visual analysis of various biological networks. Fields such as (information) visualization, visual analytics and automatic layout of networks are highlighted and illustrated by a number of examples. Then, the state of the art in network visualization for the life sciences is presented together with a discussion of standards for the graphical representation of cellular networks and biological processes.

Place, publisher, year, edition, pages
Berlin Heidelberg: Springer, 2014. 173-202 p.
Keyword [en]
biological networks, visualization, graph drawing, visual analytics, interaction, exploration, SBGN, visualization tools
National Category
Computer Science Bioinformatics (Computational Biology) Human Computer Interaction Bioinformatics and Systems Biology
Research subject
Computer Science, Information and software visualization; Computer and Information Sciences Computer Science, Computer Science
Identifiers
URN: urn:nbn:se:lnu:diva-25212DOI: 10.1007/978-3-642-41281-3_7ISBN: 978-3-642-41280-6 (print)ISBN: 978-3-642-41281-3 (print)OAI: oai:DiVA.org:lnu-25212DiVA: diva2:614602
Available from: 2013-04-05 Created: 2013-04-05 Last updated: 2014-09-01Bibliographically approved

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Publisher's full texthttp://link.springer.com/chapter/10.1007/978-3-642-41281-3_7

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CiteExportLink to record
Permanent link

Direct link
Cite
Citation style
  • apa
  • harvard1
  • ieee
  • modern-language-association-8th-edition
  • vancouver
  • Other style
More styles
Language
  • de-DE
  • en-GB
  • en-US
  • fi-FI
  • nn-NO
  • nn-NB
  • sv-SE
  • Other locale
More languages
Output format
  • html
  • text
  • asciidoc
  • rtf