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Universal dynamical function behind all genetic codes: P-adic attractor dynamical model
Linnaeus University, Faculty of Technology, Department of Mathematics. (Int Ctr Math Modelling Phys & Cognit Sci)ORCID iD: 0000-0003-1919-1495
Linnaeus University, Faculty of Technology, Department of Mathematics. (Int Ctr Math Modelling Phys & Cognit Sci)ORCID iD: 0000-0002-9857-0938
2024 (English)In: Biosystems (Amsterdam. Print), ISSN 0303-2647, E-ISSN 1872-8324, Vol. 246, article id 105353Article in journal (Refereed) Published
Abstract [en]

The genetic code is a map which gives the correspondence between codons in DNA and amino acids. In the attractor dynamical model (ADM), genetic codes can be described as the sets of the cyclic attractors of discrete dynamical systems - the iterations of functions acting in the ring of 2-adic integers Z2. This ring arises from representation of nucleotides by binary vectors and hence codons by triples of binary vectors. We construct a Universal Function B such that the dynamical functions for all known genetic codes can be obtained from B by simple transformations on the set of codon cycles- the "Addition"and "Division"operations. ADM can be employed for study of phylogenetic dynamics of genetic codes. One can speculate that the "common ancestor genetic code"was caused by B. We remark that this function has 24 cyclic attractors which distribution coincides with the distribution for the hypothetical pre-LUCA code. This coupling of the Universal Function with the pre-LUCA code assigns the genetic codes evolution perspective to ADM. All genetic codes are generated from B through the special chains of the "Addition"and "Division"operations. The challenging problem is to assign the biological meaning to these mathematical operations.

Place, publisher, year, edition, pages
Elsevier, 2024. Vol. 246, article id 105353
Keywords [en]
Genetic code, 2-adic representation of nucleotides and codons, Attractor dynamical model, Universal function, Phylogenetic dynamics of genetic codes, Algebra on the set of codons, Genetic code evolution
National Category
Mathematics Biochemistry Molecular Biology
Research subject
Mathematics, Applied Mathematics
Identifiers
URN: urn:nbn:se:lnu:diva-133473DOI: 10.1016/j.biosystems.2024.105353ISI: 001344121100001PubMedID: 39428052Scopus ID: 2-s2.0-85207154398OAI: oai:DiVA.org:lnu-133473DiVA, id: diva2:1914571
Available from: 2024-11-19 Created: 2024-11-19 Last updated: 2025-02-20Bibliographically approved

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Yurova Axelsson, EkaterinaKhrennikov, Andrei

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