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Swedish Hypersulfidic Soil Material Incubations Suggest Temperature Mainly Drives Regional Microbial Community Variation
Linnaeus University, Faculty of Health and Life Sciences, Department of Biology and Environmental Science. (Lnuc EEMiS)ORCID iD: 0000-0003-2943-5158
Linnaeus University, Faculty of Health and Life Sciences, Department of Biology and Environmental Science.ORCID iD: 0000-0002-1363-338X
Linnaeus University, Faculty of Health and Life Sciences, Department of Biology and Environmental Science.ORCID iD: 0000-0002-3585-2209
Linnaeus University, Faculty of Health and Life Sciences, Department of Biology and Environmental Science. Linnaeus University, Linnaeus Knowledge Environments, Water. (Lnuc EEMiS)ORCID iD: 0000-0002-9622-3318
2025 (English)In: European Journal of Soil Science, ISSN 1351-0754, E-ISSN 1365-2389, Vol. 76, no 2, article id e70106Article in journal (Refereed) Published
Abstract [en]

Acid sulfate soils impact surrounding ecosystems with pronounced environmental damage via leaching of strong acidity along with the concurrent mobilization of toxic metals present in the soils and, in consequence, they are often described as the nastiest soils on Earth. Within Sweden, acid sulfate soils are distributed mainly under the maximum Holocene marine limit that stretches the length of the country, some 2000 km north to south. Despite only minor geographical differences in the geochemical composition of the Swedish acid sulfate soils, their field oxidation zone microbial community compositions differ along a north-south regional divide. This study compared the 16S rRNA gene amplicon-based microbial community compositions of field oxidation zones (field tested pH _ 4.0) with reduced zone samples (field tested pH _ 6.5) collected from the same field sites throughout Sweden that had acidified (final pH _ 4.0) after laboratory incubation at approximately 20 degrees C. The previously identified regional differences observed in field oxidation zone microbial compositions were notably absent in the laboratory incubation samples. Instead, a commonly shared community was selected for with few statistically significant differences regardless of regional origin. For instance, the potential eurypsychrophilic Baltobacteraceae family was found in higher relative abundances in the northerly region of the field oxidation zone samples than the southern regions and was notably absent from the laboratory incubation samples. Furthermore, the microbial communities of the laboratory incubation samples were dominated by acidophilic autotrophic Acidithiobacillaceae and chemoheterotrophic Rhodanobacteraceae and Burkholderiaceae that have optimal growth temperatures (_= 20 degrees C) greater than what was experienced by the field oxidation zone samples when sampled (similar to 2 degrees C-9 degrees C). These data suggested that in the absence of significant geochemical differences, temperature was the predominant driver of microbial community composition in Swedish acid sulfate soil materials.

Place, publisher, year, edition, pages
Wiley , 2025. Vol. 76, no 2, article id e70106
Keywords [en]
16S rRNA gene amplicons, acid sulfate soils, iron, microbial diversity, oxidation, sulfur
National Category
Microbiology Soil Science
Research subject
Ecology, Microbiology
Identifiers
URN: urn:nbn:se:lnu:diva-138206DOI: 10.1111/ejss.70106ISI: 001468130800001Scopus ID: 2-s2.0-105003266140OAI: oai:DiVA.org:lnu-138206DiVA, id: diva2:1955279
Available from: 2025-04-29 Created: 2025-04-29 Last updated: 2026-04-14Bibliographically approved
In thesis
1. Microbiology of boreal acid sulfate soils: Biogeochemical drivers of acidity generation and metals leaching
Open this publication in new window or tab >>Microbiology of boreal acid sulfate soils: Biogeochemical drivers of acidity generation and metals leaching
2024 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Acid sulfate soils are described as the nastiest soils on Earth and are broadly composed of metal sulfides. These minerals are mostly harmless in a reducing environment. However, when these soils are drained oxygen infiltration occurs. Oxidation initiates a geochemical process, thereby starting the generation of acidity. As the pH drops, a consortium of acidophilic microbiota begin to grow and flourish. These microbes catalyze the oxidation reactions, which further generates acidity, thus driving the pH even lower. The decreasing pH leads to the solubilization of any co-occurring metals within the system. During flushing events the built-up acidity and solubilized metals mobilize and flow out of the soils into surrounding waterways to the potentially lethal detriment of resident flora and fauna.

This dissertation firstly explores the microbial communities that inhabit acid sulfate soils throughout Sweden and around Vaasa, Finland, and secondly the analogous communities of a mine waste rock repository in northern Sweden. Results from Finland showed an increase in relative abundances of extremely acidophilic microbes correlated to the decreasing pH values that followed the oxidation front. Acidity generation was not mitigated by additions of lime. Further laboratory incubations found that higher volumes and finer material sizes of lime delayed acid generation but did not prevent the development of neutrophilic iron and sulfur oxidizing microbes. The survey of Sweden extended the distribution range of acid sulfate soils and found community differences between the northerly and southerly acid sulfate soils, which were hypothesized to be a result of regional temperature variation. Furthermore, regional differences of the field oxidized samples disappeared following laboratory incubations, further supporting temperature as a driver of regional differences. Lastly, the Swedish waste rock repository study suggested that there were tipping points associated with ongoing oxidation. Subsurface associated communities rapidly decreased following excavation and were slowly replaced by a simple acidophilic community; over time a radiation of acidophiles occurred leading to an increase in acidophile diversity.

These studies together show that metal sulfide rich environments are host to resident neutrophilic to extreme acidophilic microbial communities that play integral roles to the generation of acidity and metals leaching. The composition of those communities differ based on temperature, pH, substrate type, and oxidation age. With regard to remediation strategy development, the application of fine grained lime in combination with peat may hold potential to for short termed acidity mitigation. However cautionis required when transitioning from laboratory based approaches to field trials as the communities are dynamic and complex. 

Place, publisher, year, edition, pages
Växjö: Linnaeus University Press, 2024. p. 49
Series
Linnaeus University Dissertations ; 541
Keywords
Acid sulfate soils, acid rock drainage, microbial ecology, acidophiles, oxidation, sediments, 16S rRNA gene sequences
National Category
Microbiology Ecology
Research subject
Ecology, Microbiology
Identifiers
urn:nbn:se:lnu:diva-132271 (URN)10.15626/LUD.541.2024 (DOI)9789180821995 (ISBN)9789180822008 (ISBN)
Public defence
2024-10-11, Fullriggaren, Ma135K, Pedalstråket 7, Kalmar, 09:00 (English)
Opponent
Supervisors
Available from: 2024-09-16 Created: 2024-09-06 Last updated: 2026-04-15Bibliographically approved
2. Acid sulfate soils in Sweden: Occurence, geochemistry and environmental impact
Open this publication in new window or tab >>Acid sulfate soils in Sweden: Occurence, geochemistry and environmental impact
2025 (English)Doctoral thesis, comprehensive summary (Other academic)
Abstract [en]

Acid sulfate soils are some of the most problematic soils on Earth due totheir significant release and mobilisation of acidity and metals. In Sweden,these soils have been studied to a lesser extent than in some other countrieswhere they occur as frequently. The aim of this thesis was to determine thegeographical distribution and geochemical (and microbiological) featuresof acid sulfate soils in Sweden.Field work included visiting 126 sites distributed relatively evenlythroughout the coastal plains, with each site located where acid sulfatesoils were most likely to have developed. A wide range of geochemicalanalyses were carried out: analyses of pH in situ and after incubations inthe laboratory; loss on ignition; and chemical extractions using water, 1MHCl, aqua regia, and a strong 4-acid digestion followed by ICP analyses.Statistical analyses of the geochemical data included mostly nonparametrictests for univariate and bivariate methods, and compositionaldata analysis for multivariate methods. Microbiological analyses werecarried out by a co-author.A total of 47% of all the sampled sites were classified as acid sulfatesoils, either directly in the field or after laboratory incubations. Acid sulfatesoils were identified on all coastal plains, with the highest relativeoccurrence in the northeast. The southeast coastal plains had a higherrelative occurrence than expected and the lowest measured field pH, lowestincubation pH, and the highest S concentrations. A large number ofgeochemical features were identified and characterized. These includedlosses of major and trace elements from the sulfuric soil material;physicochemical differences between acid sulfate soils in the north andsouth; and high water-soluble concentrations of several elements (e.g. Cd,Co, Mn, Ni, and Zn) indicating that these elements are at a large risk ofmobilisation and leaching. Furthermore, several chemical elements wereretained in the sulfuric soil material (e.g. Fe, As, Cr, Cu, U), most likelydue to binding by secondary Fe (III) phases. These retained elements aresusceptible to future leaching, for example under remediation scenariosthat raise the groundwater table to re-introduce reducing conditions.

Place, publisher, year, edition, pages
Linnaeus Univeristy Kalmar: Linnaeus University Press, 2025. p. 60
Series
Linnaeus University Dissertations ; 591/2025
Keywords
acid sulfate soil, hypersulfidic soils, sulfuric soils, geochemistry, metals, sulfides, leaching, pH, Sweden, mapping, compositional data
National Category
Geochemistry Environmental Sciences
Research subject
Natural Science, Environmental Science
Identifiers
urn:nbn:se:lnu:diva-141933 (URN)10.15626/LUD.591.2025 (DOI)9789180823647 (ISBN)9789180823654 (ISBN)
Public defence
2025-10-29, Azur, Hus Vita, Kalmar, 09:00 (English)
Opponent
Supervisors
Funder
Swedish Environmental Protection Agency, 802-0076-19
Available from: 2025-10-08 Created: 2025-10-08 Last updated: 2025-10-27Bibliographically approved

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Johnson, AndersNyman, AlexandraÅström, Mats E.Dopson, Mark

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